A sandboxed iTunes would also prevent syncing your iPod and importing existing music collections, because those both require access to files outside the sandbox, which is probably why Apple hasn't done that.
A sandbox isn't a totally isolated prison. It's a permissions system. Programs can read specific files and folders outside the sandbox and can even ask the user add new files/folders to their whitelist.
This is a bug from 15 years ago, much much before the sandbox feature was introduced.
A sandboxed iTunes would have prevented that.